16 (Mon) - Symposium
09:30 - 10:00 |
| Registration |
10:00 - 10:10 |
| Opening remarks
| Akiko Aizawa |
10:10 - 10:20 |
| Introduction to BLAH3 [slides]
| Jin-Dong Kim |
10:20 - 11:10 |
| Tying it all together - From terminology integration to annotation integration [slides] Keynote
| Olivier Bodenreider |
11:10 - 11:30 |
| Coffee Break |
11:30 - 11:40 |
| Text-mining-based retrieval of protein networks [slides]
| Lars Juhl Jensen |
11:40 - 11:50 |
| An overview of the MiNCor: annotation guidelines and text corpora for MicroRNA mentions in the scientific
| literature [proposal]
| Josè Camilla Sammartino, Martin Krallinger and Alfonso Valencia |
11:50 - 12:00 |
| BioASQ and PubAnnotaion : Using linked annotations in biomedical question answering [proposal][slides]
| Anastasios Nentidis, Zi Yang, Mariana Neves, Jin-Dong Kim, Anastasia Krithara, George Paliouras and
| Ioannis Kakadiaris |
12:00 - 12:10 |
| Customized automatic corpus annotations using AlvisNLP/ML [proposal][slides]
| Robert Bossy, Mouhamadou Ba and Claire Nédellec |
12:10 - 12:20 |
| Towards seamless format conversion between BioC and PubAnnotation for sharing PubMed/PubMed Central
| documents and annotations [proposal][slides]
| Sun Kim, Donald Comeau, Rezarta Islamaj Dogan and Zhiyong Lu |
12:20 - 12:30 |
| The Noctua Modeling Tool [slides]
| Seth Carbon |
12:30 - 14:00 |
| Lunch |
14:00 - 14:50 |
| Scientific Paper Analysis: JST CREST Project on Big Data Application [slides] Keynote
| Yuji Matsumoto |
14:50 - 15:00 |
| Linked Annotation Networks: Developing an Infrastructure for Inference [proposal][slides][wrapup_slides]
| Tiffany J. Callahan and Lawrence E. Hunter |
15:00 - 15:10 |
| Data programming for PubAnnotation via Snorkel [proposal][slides]
| Juan Banda |
15:10 - 15:20 |
| YBio M2CMT : a flexible bio-text mining tool for multi-component multi-target [proposal]
| Min Song, Sung Jeon Song, Yonghwan Kim, Kyu Bin Ahn and In Jun Baek |
15:20 - 15:30 |
| Annotating the SIRO model and discovering experimental protocols [proposal]
| Olga Giraldo, Alexander Garcia, Tazro Ohta and Federico Lopez |
15:30 - 15:50 |
| Coffee Break |
15:50 - 16:40 |
| Integrating biomedical data annotation in scientific publishing [slides] Keynote
| Thomas Lemberger |
16:40 - 16:50 |
| Integrating PubTator in the curation pipeline of SourceData [proposal][slides][wrapup_slides]
| Lou Götz, Nancy George, Sara El-Gebali, Anastasia Chasapi, Isaac Crespo, Ioannis Xenarios, Robin Liechti
| and Thomas Lemberger |
16:50 - 17:00 |
| BioCreative 2017 PM task: finding mutations affecting protein interactions for precision medicine
| Zhiyong Lu |
17:00 - 17:10 |
| Building a cost-effective gold standard set for enriching PubAnnotation [proposal][slides]
| Dongseop Kwon, Chih-Hsuan Wei, Sun Kim, Robert Leaman and Zhiyong Lu |
17:10 - 17:20 |
| Extending the interoperability of tagtog and PubAnnotation [proposal]
| Juan Miguel Cejuela and Jorge Campos |
17:20 - 17:25 |
| Closing |
17:35 - 19:00 |
| Free (Organizers to clean the venue) |
19:00 - 21:30 |
| Banquet |
17 (Tue) - Hackathon
09:10 - 10:00 |
| Morning talk: Tutorial on PubAnnotation
| Jin-Dong Kim |
10:00 - 12:00 |
| Introductions, Planning, Grouping |
12:00 - 13:00 |
| Lunch |
13:00 - 17:00 |
| Hacking |
17:00 - 18:00 |
| Wrap-up |
18 (Wed) - Hackathon
09:10 - 10:00 |
| Morning talk: High throughput assays and NLP
| Kevin Cohen |
10:00 - 12:00 |
| Hacking |
12:00 - 13:00 |
| Lunch |
13:00 - |
| excursion
|
19 (Thu) - Hackathon
09:10 - 09:40 |
| Morning Talk1: Tutorial on RxNorm
| Olivier Bodenreider |
09:40 - 10:10 |
| Morning Talk2: The art of counting: scoring and ranking co-occurrences in literature [slides]
| Lars Juhl Jensen |
10:00 - 12:00 |
| Hacking |
12:00 - 13:00 |
| Lunch |
13:00 - 17:00 |
| Hacking |
17:00 - 18:00 |
| Wrap-up |
20 (Fri) - Hackathon
09:00 - 12:00 |
| Hacking |
12:00 - 13:00 |
| Lunch |
13:00 - 15:00 |
| Hacking |
15:00 - 17:00 |
| Grand Wrap-up and Discussions |
|
 Updating...
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