Program

16th Mon	17th Tue	18th Wed	19th Thu	20th Fri
Registration Symposium Reception	Hackathon	Hackathon Excursion	Hackathon	Hackathon G. Wrap-up

The symposium program and the last day grand wrap-up will be ustreamed.

16 (Mon) - Symposium

09:30 - 10:00	\| Registration
10:00 - 10:10	\| Opening remarks \| Akiko Aizawa
10:10 - 10:20	\| Introduction to BLAH3 [slides] \| Jin-Dong Kim
10:20 - 11:10	\| Tying it all together - From terminology integration to annotation integration [slides] Keynote \| Olivier Bodenreider
11:10 - 11:30	\| Coffee Break
11:30 - 11:40	\| Text-mining-based retrieval of protein networks [slides] \| Lars Juhl Jensen
11:40 - 11:50	\| An overview of the MiNCor: annotation guidelines and text corpora for MicroRNA mentions in the scientific \| literature [proposal] \| Josè Camilla Sammartino, Martin Krallinger and Alfonso Valencia
11:50 - 12:00	\| BioASQ and PubAnnotaion : Using linked annotations in biomedical question answering [proposal][slides] \| Anastasios Nentidis, Zi Yang, Mariana Neves, Jin-Dong Kim, Anastasia Krithara, George Paliouras and \| Ioannis Kakadiaris
12:00 - 12:10	\| Customized automatic corpus annotations using AlvisNLP/ML [proposal][slides] \| Robert Bossy, Mouhamadou Ba and Claire Nédellec
12:10 - 12:20	\| Towards seamless format conversion between BioC and PubAnnotation for sharing PubMed/PubMed Central \| documents and annotations [proposal][slides] \| Sun Kim, Donald Comeau, Rezarta Islamaj Dogan and Zhiyong Lu
12:20 - 12:30	\| The Noctua Modeling Tool [slides] \| Seth Carbon
12:30 - 14:00	\| Lunch
14:00 - 14:50	\| Scientific Paper Analysis: JST CREST Project on Big Data Application [slides] Keynote \| Yuji Matsumoto
14:50 - 15:00	\| Linked Annotation Networks: Developing an Infrastructure for Inference [proposal][slides][wrapup_slides] \| Tiffany J. Callahan and Lawrence E. Hunter
15:00 - 15:10	\| Data programming for PubAnnotation via Snorkel [proposal][slides] \| Juan Banda
15:10 - 15:20	\| YBio M²CMT : a flexible bio-text mining tool for multi-component multi-target [proposal] \| Min Song, Sung Jeon Song, Yonghwan Kim, Kyu Bin Ahn and In Jun Baek
15:20 - 15:30	\| Annotating the SIRO model and discovering experimental protocols [proposal] \| Olga Giraldo, Alexander Garcia, Tazro Ohta and Federico Lopez
15:30 - 15:50	\| Coffee Break
15:50 - 16:40	\| Integrating biomedical data annotation in scientific publishing [slides] Keynote \| Thomas Lemberger
16:40 - 16:50	\| Integrating PubTator in the curation pipeline of SourceData [proposal][slides][wrapup_slides] \| Lou Götz, Nancy George, Sara El-Gebali, Anastasia Chasapi, Isaac Crespo, Ioannis Xenarios, Robin Liechti \| and Thomas Lemberger
16:50 - 17:00	\| BioCreative 2017 PM task: finding mutations affecting protein interactions for precision medicine \| Zhiyong Lu
17:00 - 17:10	\| Building a cost-effective gold standard set for enriching PubAnnotation [proposal][slides] \| Dongseop Kwon, Chih-Hsuan Wei, Sun Kim, Robert Leaman and Zhiyong Lu
17:10 - 17:20	\| Extending the interoperability of tagtog and PubAnnotation [proposal] \| Juan Miguel Cejuela and Jorge Campos
17:20 - 17:25	\| Closing
17:35 - 19:00	\| Free (Organizers to clean the venue)
19:00 - 21:30	\| Banquet

Hackathon Documentation

17 (Tue) - Hackathon

09:10 - 10:00	\| Morning talk: Tutorial on PubAnnotation \| Jin-Dong Kim
10:00 - 12:00	\| Introductions, Planning, Grouping
12:00 - 13:00	\| Lunch
13:00 - 17:00	\| Hacking
17:00 - 18:00	\| Wrap-up

18 (Wed) - Hackathon

09:10 - 10:00	\| Morning talk: High throughput assays and NLP \| Kevin Cohen
10:00 - 12:00	\| Hacking
12:00 - 13:00	\| Lunch
13:00 -	\| excursion

19 (Thu) - Hackathon

09:10 - 09:40	\| Morning Talk1: Tutorial on RxNorm \| Olivier Bodenreider
09:40 - 10:10	\| Morning Talk2: The art of counting: scoring and ranking co-occurrences in literature [slides] \| Lars Juhl Jensen
10:00 - 12:00	\| Hacking
12:00 - 13:00	\| Lunch
13:00 - 17:00	\| Hacking
17:00 - 18:00	\| Wrap-up